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Data Set Group: UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene and Exon Level (Apr14) RMA modify this page

Data Set: UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA modify this page
GN Accession: GN539
GEO Series:
Title:
Organism: Mouse (mm10)
Group: BXD
Tissue: Gastrointestinal mRNA
Dataset Status: Public
Platforms: Affy Mouse Gene 1.0 ST (GPL6246)
Normalization: RMA
Contact Information
Dennis D Black
UT Le Bonheur Pediatric Specialists
51 N. Dunlap St., Suite 400
Memphis, TN 38105 USA
Tel. 1-866-870-5570
dblack@uthsc.edu
Website
Download datasets and supplementary data files

Specifics of this Data Set:

Gene Level



Summary:


About the cases used to generate this set of data:
Index CaseID Strain Sex Coat Color Date of Birth Generation Sacrifice Date Age RNA
conc.(ug/ul)
RNA Purity
260/280
RNA Integrity Number RIN Run Chip Notes
1 081910.14 B6D2F1 M black 06/10/2010   08/18/2010 69 0.5 2.00 8.40 y  
2 081910.17 B6D2F1 M black 06/10/2010   08/18/2010 69 0.9 2.00 8.60    
3 081910.18 B6D2F1 F black 06/10/2010   08/18/2010 69 0.3 1.80 9.30 y  
4 081910.09 D2B6F1 F black 06/02/2010   08/18/2010 77 0.7 2.00 9.00 y  
5 081910.23 D2B6F1 M black 06/02/2010   08/18/2010 77 10.2 2.02 8.50 y  
6 081910.12 C57BL/6J F black 06/02/2010   08/18/2010 77 0.6 1.90 n/a y  
7 081910.25 C57BL/6J M black 06/02/2010   08/18/2010 77 3.4 2.03   y  
8 081910.39 C57BL/6J F black 06/02/2010   08/18/2010 77 2.30 1.99 8.50 y  
9 081910.41 C57BL/6J M black 06/18/2010   08/18/2010 61 2.20 2.02 8.60 y  
10 081910.29 DBA/2J F dilute brown DBA 06/02/2010   08/18/2010 77 2.9 2.03 8.50 y need one more female
11 081910.31 DBA/2J M dilute brown DBA 06/11/2010   08/18/2010 68 8.6 2.06 8.00 y  
12 081910.43 DBA/2J M dilute brown DBA 05/06/2010   08/18/2010 104 2.30 2.01 9.30 y  
13 081810.08 BXD1 M dilute brown DBA 05/24/2010 142 08/17/2010 85 0.6 1.92 8.50 y  
14 081810.13 BXD1 F dilute brown DBA 06/07/2010 139 08/17/2010 71 0.7   9.00 y  
15 081710.91 BXD11 M black 06/02/2010 137 08/17/2010 76 0.7 1.93 8.20 y  
16 081710.97 BXD11 F black 05/22/2010 136 08/17/2010 87 1.0 1.95 8.90 y  
17 081810.23 BXD12 M gray 06/01/2010 122 08/17/2010 77 0.9 2.00 8.00 y  
18 081810.44 BXD12 F gray 06/01/2010 122 08/18/2010 78 0.8 1.93 8.30 y  
19 081810.33 BXD14 F black 05/29/2010 142 08/17/2010 80 1.2 1.97 8.10 y  
20 081810.52 BXD14 M black 05/29/2010 142 08/18/2010 81 0.4 1.90 9.00 y  
21 081810.19 BXD24 F brown 05/24/2010 90 08/17/2010 85 0.3 1.90 9.10 y This strain comes from UTHSC colony since 2008. So they are probably blind.
22 081810.42 BXD24 M brown 05/24/2010 90 08/17/2010 85 0.7 2.00 8.50 y This strain comes from UTHSC colony since 2008. So they are probably blind.
23 081710.99 BXD27 M dilute brown DBA 06/05/2010 162 08/17/2010 73 1.3 1.95 8.40 y need one more female
24 081810.04 BXD29 M gray 06/07/2010 25 08/17/2010 71 0.5 1.91 8.40 y  
25 081810.10 BXD29 F gray 06/07/2010 25 08/17/2010 71 0.6 1.97 8.70 y  
26 081810.18 BXD31 M black 06/05/2010 130 08/17/2010 73 0.5 1.88 8.70 y  
27 081810.40 BXD31 F black 06/05/2010 130 08/17/2010 73 1.1 2.00 7.00 y  
28 081610.76 BXD32 F black 05/29/2010 116 08/18/2010 81 3.8 2.05 9.10 y need one more male
29 081810.26 BXD34 M black 06/02/2010 63 08/17/2010 76 1.3 1.98 8.20 y  
30 081810.29 BXD34 M black 06/02/2010 63 08/17/2010 76 0.7 1.93 8.50    
31 081810.46 BXD34 F black 06/02/2010 63 08/18/2010 77 1.0 2.00 7.10 y  
32 081810.36 BXD39 M gray 05/31/2010 68 08/17/2010 78 0.6 1.94 8.20 y  
33 081810.55 BXD39 F gray 05/31/2010 68 08/18/2010 79 0.8 1.96 8.40 y  
34 081910.03 BXD40 F gray 05/25/2010 58 08/18/2010 85 1.2 2.00 8.80 y  
35 081910.06 BXD40 M gray 05/25/2010 58 08/18/2010 85 0.7 1.90 8.80 y  
36 081810.31 BXD42 F black 05/23/2010 64 08/17/2010 86 0.9 1.95 8.30 y  
37 081810.48 BXD42 M black 05/23/2010 64 08/18/2010 87 0.8 1.93 8.90 y  
38 081710.47 BXD43 M black 05/28/2010 44 08/17/2010 81 1.2 1.95 8.10 y  
39 081710.48 BXD43 F black 05/28/2010 44 08/17/2010 81 1.7 1.96 8.90 y  
40 081710.49 BXD43 F black 05/28/2010 44 08/17/2010 81 1.2 1.95 8.50    
41 081710.23 BXD44 F brown 05/26/2010 41 08/17/2010 83 1.1 1.96 8.30 y  
42 081710.24 BXD44 F brown 05/26/2010 41 08/17/2010 83 0.9 1.92 8.70    
43 081710.30 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 1.3 1.97 8.20 y  
44 081710.31 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 1.6 1.98 8.30    
45 081710.32 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 0.8 1.95 8.80    
46 081710.51 BXD45 M dilute brown DBA 06/01/2010 39 08/17/2010 77 1.2 1.94 7.80 y  
47 081710.54 BXD45 F dilute brown DBA 06/01/2010 39 08/17/2010 77 1.0 1.94 7.30 y  
48 081610.14 BXD48 F black 06/03/2010 40 08/18/2010 76 2.2 2.01 9.50 y  
49 081610.17 BXD48 M black 06/03/2010 40 08/18/2010 76 3.3 2.05 8.20 y  
50 081710.29 BXD49 M gray 05/25/2010 49 08/17/2010 84 1.6 1.97 7.10 y  
51 081710.34 BXD49 F gray 05/25/2010 24 08/17/2010 84 1.0 1.95 8.50 y  
52 081610.29 BXD50 F black 06/02/2010 35 08/18/2010 77 3.3 2.05 8.40 y  
53 081610.32 BXD50 M black 06/02/2010 35 08/18/2010 77 9.1 2.03 8.40 y  
54 081610.36 BXD56 M black 06/02/2010 34 08/18/2010 77 1.9 2.02 9.60 y  
55 081610.77 BXD56 F black 05/26/2010 34 08/18/2010 84 3.4 2.05 8.20 y  
56 081610.80 BXD56 F black 05/26/2010 33 08/18/2010 84 3.2 2.05 8.50    
57 081710.67 BXD60 M brown 06/08/2010 43 08/17/2010 70 0.9 1.91 8.40 y need one more female
58 081810.83 BXD62 M brown 05/27/2010 41 08/18/2010 83 0.5 1.95 8.10 y need one more female
59 081610.22 BXD63 M dilute brown DBA 06/02/2010 31 08/18/2010 77 6.9 2.07 8.50 y  
60 081610.25 BXD63 F dilute brown DBA 06/02/2010 31 08/18/2010 77 2.2 2.00 8.70 y  
61 081610.03 BXD65 M brown 05/26/2010 32 08/18/2010 84 11.2 2.03 8.70 y  
62 081610.11 BXD65 F brown 05/26/2010 32 08/18/2010 84 3.1 2.03 9.10 y  
63 081610.96 BXD68 F brown 06/03/2010 33 08/18/2010 76 4.0 2.03 8.20 y  
64 081610.99 BXD68 M brown 06/03/2010 33 08/18/2010 76 3.4 2.09 7.80 y  
65 081710.71 BXD69 M dilute brown DBA 05/29/2010 41 08/17/2010 80 1.3 1.96 7.90 y  
66 081710.78 BXD69 F dilute brown DBA 06/09/2010 42 08/17/2010 69 0.8 1.90 8.50 y  
67 081610.85 BXD70 M dilute brown DBA 06/03/2010 36 08/18/2010 76 4.6 1.99 9.40 y  
68 081610.92 BXD70 F dilute brown DBA 06/03/2010 36 08/18/2010 76 3.1 2.07 8.50 y  
69 081910.33 BXD71 F dilute brown DBA 06/03/2010 35 08/18/2010 76 2.8 2.05 8.00 y  
70 081910.38 BXD71 M dilute brown DBA 06/03/2010 35 08/18/2010 76 4.6 2.02 8.30 y  
71 081710.81 BXD73 F dilute brown DBA 05/26/2010 44 08/17/2010 83 0.8 1.90 8.60 y  
72 081710.83 BXD73 M dilute brown DBA 05/26/2010 41 08/17/2010 83 0.8 1.91 8.40 y  
73 081810.58 BXD75 M dilute brown DBA 06/03/2010 39 08/18/2010 76 0.8 1.95 8.70 y  
74 081810.73 BXD75 F dilute brown DBA 06/03/2010 39 08/18/2010 76 0.7 1.92 9.30 y  
75 081710.06 BXD79 F gray 05/23/2010 24 08/18/2010 87 2.9 2.04 8.60 y  
76 081710.08 BXD79 M gray 05/23/2010 24 08/18/2010 87 2.1 2.01 9.40 y  
77 081710.87 BXD80 F dilute brown DBA 06/05/2010 33 08/17/2010 73 1.2 1.95 8.20 y  
78 081710.88 BXD80 M dilute brown DBA 06/05/2010 33 08/17/2010 73 0.8 1.91 8.00 y  
79 081610.64 BXD83 M dilute brown DBA 05/29/2010 32 08/18/2010 81 2.5 2.04 8.50 y  
80 081610.69 BXD83 F dilute brown DBA 05/29/2010 32 08/18/2010 81 2.7 2.05 8.20 y  
81 081810.80 BXD84 F dilute brown DBA 06/03/2010 31 08/18/2010 76 0.9 1.96 8.80 y need one more male
82 081710.10 BXD85 F dilute brown DBA 06/05/2010 40 08/18/2010 74 3.7 2.04 7.90 y  
83 081710.13 BXD85 M dilute brown DBA 06/05/2010 40 08/18/2010 74 2.9 2.06 8.40 y  
84 081610.60 BXD87 M black 05/27/2010 35 08/18/2010 83 3.4 2.04 8.30 y  
85 081610.63 BXD87 F black 05/27/2010 35 08/18/2010 83 3.1 2.05 8.40 y  
86 081610.40 BXD89 M dilute brown DBA 05/28/2010 36 08/18/2010 82 2.6 2.05 8.50 y need one more female
87 081610.53 BXD90 F dilute brown DBA 05/28/2010 39 08/18/2010 82 9.1 2.06 8.60 y  
88 081610.57 BXD90 M dilute brown DBA 05/28/2010 39 08/18/2010 82 2.1 2.02 9.40 y  
89 081610.87 BXD92A F brown 05/24/2010 42 08/18/2010 86 2.6 2.05 8.60 y  
90 081610.93 BXD92A M brown 05/21/2010 42 08/18/2010 89 8.5 2.07 8.80 y  
91 081910.32 BXD95 M dilute brown DBA 06/03/2010 25 08/18/2010 76 2.7 2.05 9.20 y  
92 081610.81 BXD95 F dilute brown DBA 06/03/2010 25 08/18/2010 76 3.2 2.07 8.70 y  
93 081610.84 BXD95 M dilute brown DBA 06/03/2010 25 08/18/2010 76 13.3 1.97 7.70    
94 081610.47 BXD97 F brown 06/08/2010 35 08/18/2010 71 2.3 2.00 9.10 y need one more male
95 081610.06 BXD99 F dilute brown DBA 06/02/2010 28 08/18/2010 77 4.2 2.01 9.00 y  
96 081610.20 BXD99 M dilute brown DBA 06/02/2010 28 08/18/2010 77 2.2 2.00 8.90 y  
97 081810.63 BXD100 M black 05/27/2010 30 08/18/2010 83 0.7 1.90 8.60 y  
98 081810.75 BXD100 F black 05/27/2010 30 08/18/2010 83 0.9 1.95 8.10 y  
99 081710.14 BXD101 M gray 05/21/2010 27 08/18/2010 89 2.9 2.05 8.90 y  
100 081710.19 BXD101 F gray 05/21/2010 27 08/18/2010 89 3.2 2.06 8.30 y  
101 081710.41 BXD102 F brown 05/21/2010 25 08/17/2010 88 1.5 1.95 7.70 y  
102 081710.45 BXD102 M brown 05/21/2010 25 08/17/2010 88 1.2 1.97 7.70 y  
103 081710.58 BXD103 M dilute brown DBA 05/31/2010 21 08/17/2010 78 1.1 1.94 8.40 y  
104 081710.62 BXD103 F dilute brown DBA 05/31/2010 21 08/17/2010 78 0.6 1.91 8.40 y  


About the tissue used to generate this set of data:

Approximately two equal-sized segments of the small intestine were pooled per animal: one taken from the proximal jejunum and one from the distal ileum. We did generate a second data set (not in GeneNetwork) for different segments of the the GI tract from stomach to distal colon for C57BL/6J and DBA/2J parental strains. These additional data are available upon request from Drs. Dennis Black and Lu Lu.



About the array platform:

[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]



About data values and data processing:

This dataset includes Gene and Exon level RMA normalization.



Notes:


Experiment Type:


Contributor:


Citation:


Data source acknowledgment:


Study Id:
188

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